Protein Info for ABIE51_RS03790 in Lysobacter sp. OAE881

Annotation: APC family permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 417 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 38 to 58 (21 residues), see Phobius details amino acids 77 to 100 (24 residues), see Phobius details amino acids 118 to 138 (21 residues), see Phobius details amino acids 146 to 168 (23 residues), see Phobius details amino acids 188 to 206 (19 residues), see Phobius details amino acids 218 to 239 (22 residues), see Phobius details amino acids 263 to 287 (25 residues), see Phobius details amino acids 312 to 331 (20 residues), see Phobius details amino acids 337 to 359 (23 residues), see Phobius details amino acids 370 to 390 (21 residues), see Phobius details amino acids 396 to 414 (19 residues), see Phobius details PF13520: AA_permease_2" amino acids 5 to 393 (389 residues), 161.3 bits, see alignment E=3.8e-51 PF00324: AA_permease" amino acids 12 to 395 (384 residues), 110.4 bits, see alignment E=9.8e-36

Best Hits

KEGG orthology group: None (inferred from 69% identity to xcb:XC_3881)

Predicted SEED Role

"Amino acid permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (417 amino acids)

>ABIE51_RS03790 APC family permease (Lysobacter sp. OAE881)
MRAVSRWQIVGLSINDVVGSGIYLLPAAAAALLGPASLWAVLLAGLAVSLLVLCYAQAAS
YFDAPGGGYLYAREAFGPFIGFEVGWMLLLTRVATAAALANGLAEAVTHFWPAADAGWAR
VSIVSGSIALLVAINVVGVRAAANAGVLLAIGKLVPLALFVVIGVFFVDTSLAAPSTAPL
TARPLAEAALLLLFAYAGFENLPAAAGEYRNPRRDVPFALLTMIATVTFVYVSVQWVALG
TLPDLAHSSTPLAEAASRFSGEWLALVMTVGASISILGTSSNTVLMAPRYLLALSQDGYG
PRWLGAIHPRFRTPAVSIVLIGAVSLALALSGSFVQLALLSVVSRLCTYLGTAGSVLVLR
HKHGDREGALRLPGGPLIPVAAIVLSLALLASAQVANLIAAAIALVIGAVVYAFRRR