Protein Info for ABIE51_RS03625 in Lysobacter sp. OAE881

Annotation: sugar porter family MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 476 transmembrane" amino acids 19 to 38 (20 residues), see Phobius details amino acids 57 to 77 (21 residues), see Phobius details amino acids 89 to 108 (20 residues), see Phobius details amino acids 114 to 135 (22 residues), see Phobius details amino acids 147 to 169 (23 residues), see Phobius details amino acids 189 to 209 (21 residues), see Phobius details amino acids 271 to 295 (25 residues), see Phobius details amino acids 309 to 330 (22 residues), see Phobius details amino acids 338 to 359 (22 residues), see Phobius details amino acids 377 to 401 (25 residues), see Phobius details amino acids 413 to 439 (27 residues), see Phobius details amino acids 445 to 464 (20 residues), see Phobius details TIGR00879: MFS transporter, sugar porter (SP) family" amino acids 15 to 474 (460 residues), 364.2 bits, see alignment E=5.1e-113 PF00083: Sugar_tr" amino acids 24 to 475 (452 residues), 367.9 bits, see alignment E=1.2e-113 PF07690: MFS_1" amino acids 28 to 379 (352 residues), 119.9 bits, see alignment E=1.8e-38 PF06609: TRI12" amino acids 48 to 227 (180 residues), 32.8 bits, see alignment E=4.3e-12

Best Hits

KEGG orthology group: K08139, MFS transporter, SP family, sugar:H+ symporter (inferred from 81% identity to xac:XAC1777)

Predicted SEED Role

"D-xylose proton-symporter XylE" in subsystem Xylose utilization

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (476 amino acids)

>ABIE51_RS03625 sugar porter family MFS transporter (Lysobacter sp. OAE881)
MNSATLEGSRSASAENTRFIVLVSCVATIGGFLFGFDSGVINGTVDGLQQAFQSTKAGLG
FEVASMLLGCAIGAFFAGRLADRWGRRSVLIISAVLFLISALGSGAATSSVMFVIARVIG
GFAVGAASVMSPAYIAEVASARYRGRLATVQQIAIIGGLFCAFLSNFLLAKTAGASTQPL
WLGHEAWRWMFWMMAFPSALFLVLLLTIPESPRYLVVKKRKDDALAVLTKLYGAGEAQTK
LAEIDASLSVDHHRPQLSDLINKTTGKIRPIVWIGIGLATFQQLVGINVVFYYGAVLWQA
VGFSESDALLINVLSGALSIGACLVTVLLIDRIGRKPLLWIGSVGMAISLALMTFAFATA
SLDAAGKLVLSDGMGTLALIAANVYVIFFNASWGPVMWVMLGEMFPNQIRGSGLAVAGAA
QWTSNFAITVTFPILLAGIGLAGAYGIYTVAAIVSVFFVLKYVYETKGKELEQMEG