Protein Info for ABIE51_RS03035 in Lysobacter sp. OAE881

Annotation: tyrosine recombinase XerC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 304 PF02899: Phage_int_SAM_1" amino acids 14 to 96 (83 residues), 79.6 bits, see alignment E=2.5e-26 TIGR02224: tyrosine recombinase XerC" amino acids 15 to 299 (285 residues), 365.3 bits, see alignment E=1.2e-113 PF00589: Phage_integrase" amino acids 118 to 285 (168 residues), 164.4 bits, see alignment E=3.2e-52

Best Hits

Swiss-Prot: 77% identical to XERC_XANCB: Tyrosine recombinase XerC (xerC) from Xanthomonas campestris pv. campestris (strain B100)

KEGG orthology group: K03733, integrase/recombinase XerC (inferred from 77% identity to xcc:XCC3497)

Predicted SEED Role

"Site-specific tyrosine recombinase" in subsystem Proteasome bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (304 amino acids)

>ABIE51_RS03035 tyrosine recombinase XerC (Lysobacter sp. OAE881)
MNAQQDHEPRVADIEDYLAHLQVERRMSAHTLDAYRRDLMALAQWARHERGDVASLHNEQ
LRGFVAAEHRRGLSPKSLQRRLSACRSFYAWLVKQGRIAASPAASIRSPKAPRKLPQVLD
PDEAKALVEVPTDAPLGLRDRALLELFYSSGLRLSELCSLRWRDLDLSDALVNVLGKGNK
QRSVPLGSHARAALSEWRASTGAANDAHVFPGRNGGAITPRAVQLRMRHLAQQQGLFKRV
HPHLLRHSFASHILESSGDLRGVQELLGHADIATTQIYTHLDYQHLAKVYDDAHPRARRK
GGQG