Protein Info for ABIE51_RS02590 in Lysobacter sp. OAE881

Annotation: GlxA family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 signal peptide" amino acids 1 to 21 (21 residues), see Phobius details PF01965: DJ-1_PfpI" amino acids 35 to 167 (133 residues), 52.6 bits, see alignment E=7.2e-18 PF00165: HTH_AraC" amino acids 216 to 251 (36 residues), 38.3 bits, see alignment 1.6e-13 PF12833: HTH_18" amino acids 228 to 306 (79 residues), 75.4 bits, see alignment E=5.5e-25

Best Hits

KEGG orthology group: None (inferred from 67% identity to rlg:Rleg_3583)

Predicted SEED Role

"Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (313 amino acids)

>ABIE51_RS02590 GlxA family transcriptional regulator (Lysobacter sp. OAE881)
MLTIGFVAPPGFQIMGLAAASAFELANTTAGEALYDIRILSEKGGPVVNSLGIPLETRVL
ARAKVDTLIVTGLLHPVASSPDLIRQVRKAGKSVRRIASVCTGAFILGEAGLLDGRRVTT
HWFHARDLRARFPDAVVEDDRIFIIDGALWTSAGMSAGIDLALGMIEKDFGVELARAVAQ
KLVVYHRRGGGQSQHSALLELDAKSDRVQSALDYARSHLKSALSVEELADAAHLSPRQFS
RAFRAETGQSPAKAVEHLRVEAARVMIEQGRHSMGEVAVETGFADIERMRRAFLRAFGQP
PQVLRRNARRAAA