Protein Info for ABIE51_RS02585 in Lysobacter sp. OAE881

Annotation: SDR family oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 269 PF08659: KR" amino acids 8 to 171 (164 residues), 40.9 bits, see alignment E=4.4e-14 PF00106: adh_short" amino acids 9 to 196 (188 residues), 148 bits, see alignment E=5e-47 PF01370: Epimerase" amino acids 10 to 98 (89 residues), 25.6 bits, see alignment E=1.6e-09 PF13561: adh_short_C2" amino acids 14 to 197 (184 residues), 101.1 bits, see alignment E=1.5e-32

Best Hits

KEGG orthology group: K07124, (no description) (inferred from 68% identity to reh:H16_B1790)

Predicted SEED Role

"Short-chain dehydrogenases of various substrate specificities"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (269 amino acids)

>ABIE51_RS02585 SDR family oxidoreductase (Lysobacter sp. OAE881)
MNTPIHQGTALITGASSGIGAIYADRLARAGYDLILVARRGDALRSLAQDLTTRTGRSIE
TLVADLTRPDDLARVESVLRTDASITLLVNNAGVGATAPLLQSDVADMDRMISLNVSVPM
RLAYAAAPAFVARGAGTIVNIASIVALQPELLNGVYGGSKAFVLALSQSLHHELADKGVR
VQAVLPGATATGFWAAAGTPIEHLPQEIVMSADDMVDAALAGLAMGELVTIPALPDIAQW
NAFESARTALRPGLSRTSPASRYRTAQAA