Protein Info for ABIE51_RS01790 in Lysobacter sp. OAE881

Annotation: stage II sporulation protein M

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 336 transmembrane" amino acids 113 to 134 (22 residues), see Phobius details amino acids 186 to 218 (33 residues), see Phobius details amino acids 235 to 255 (21 residues), see Phobius details amino acids 275 to 299 (25 residues), see Phobius details amino acids 305 to 324 (20 residues), see Phobius details PF01944: SpoIIM" amino acids 118 to 297 (180 residues), 118.8 bits, see alignment E=1.2e-38

Best Hits

KEGG orthology group: None (inferred from 59% identity to smt:Smal_3844)

Predicted SEED Role

"FIG01248689: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (336 amino acids)

>ABIE51_RS01790 stage II sporulation protein M (Lysobacter sp. OAE881)
MKQEHFVQRHQPEWIAFEHWLDARGESARKARAERRNWHGLSDADMPSRYRRLCQQLALA
RRRGYSPVVTDRLQALMHRGHGLLYRTPVPHWRRAAQFLIAGFPRLVRAERGCMLASFAL
FWIPLVVIFAAIQWQPELSSSLFDPAQLMQFERMYDPADPARKLGRDSGTDVAMFGHYVW
NNVSIGFRTFASGLIAGIGSIVVLIVNGVMIGGVAGHLQAVGHGDPFWRFVAAHSAPELT
AIVIAGGAGLRLGLSLIAPGQRRRADALVEGGRRGALLCVGVLAMLVFAAFVEAFWSSIA
WMPAWIKYTVGGVLWTLTAAWLLLGGRNLPPEDAAP