Protein Info for ABIE51_RS01730 in Lysobacter sp. OAE881

Annotation: ParB/RepB/Spo0J family partition protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 TIGR00180: ParB/RepB/Spo0J family partition protein" amino acids 36 to 201 (166 residues), 202.8 bits, see alignment E=2e-64 PF02195: ParBc" amino acids 39 to 127 (89 residues), 108.7 bits, see alignment E=1.3e-35 PF17762: HTH_ParB" amino acids 177 to 227 (51 residues), 51.7 bits, see alignment 6.3e-18

Best Hits

Swiss-Prot: 70% identical to PARB_XYLFT: Probable chromosome-partitioning protein ParB (parB) from Xylella fastidiosa (strain Temecula1 / ATCC 700964)

KEGG orthology group: K03497, chromosome partitioning protein, ParB family (inferred from 73% identity to xal:XALc_0105)

Predicted SEED Role

"Chromosome (plasmid) partitioning protein ParB" in subsystem Bacterial Cytoskeleton or Plasmid replication or Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (302 amino acids)

>ABIE51_RS01730 ParB/RepB/Spo0J family partition protein (Lysobacter sp. OAE881)
MTVAKKRGLGRGLEALLGPKAAAEAPVLEAVEGDVLRHLPVDALTPGKYQPRKHWDQEKL
EELAESIKAQGVIQPIVVRDLGGKRYEIIAGERRWRASQLAGLDQIPVVIREVDDRTVVA
MALIENIQREDLNPLEEANALQRLIDEFDLTHAQAAEAVGRSRAAVSNLLRLLELPPEIR
VLLETHALEMGHARALLALTPQAAIALARQAAEHGWSVREVEHRVQQLAAGQIPTSGSAK
PKAAKAKPQADIVALERELSESLNTKVNVLHGRGGKGRLVIHYTDLDSLDGVLEKLRGSV
TE