Protein Info for ABIE51_RS01570 in Lysobacter sp. OAE881

Annotation: family 20 glycosylhydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 994 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details PF02838: Glyco_hydro_20b" amino acids 57 to 183 (127 residues), 71.6 bits, see alignment E=2e-23 PF00728: Glyco_hydro_20" amino acids 186 to 528 (343 residues), 398.5 bits, see alignment E=6.2e-123 PF13290: CHB_HEX_C_1" amino acids 573 to 624 (52 residues), 42.8 bits, see alignment 8.3e-15 PF13287: Fn3_assoc" amino acids 579 to 624 (46 residues), 35.9 bits, see alignment 1.3e-12

Best Hits

Predicted SEED Role

"Beta-hexosaminidase (EC 3.2.1.52)" in subsystem Chitin and N-acetylglucosamine utilization or N-Acetyl-Galactosamine and Galactosamine Utilization (EC 3.2.1.52)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.52

Use Curated BLAST to search for 3.2.1.52

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (994 amino acids)

>ABIE51_RS01570 family 20 glycosylhydrolase (Lysobacter sp. OAE881)
MRRHFVTSIAAVALAMGLSACQREDAPKADAAGNAAAKPAEQTTATTLISASAAATPVIP
RPAKVELRDGRFAFGPQSRVAVIGNDAEATRIAQDFASRVQKARGFAPQVGGAADGAAVV
FAIDANIAPAGDEAYVVDITPQGARISARKPAGLFYGAVTLWQLLADGAQGEASVATQRI
EDAPRFGWRGLMLDVARHFRTPDEVKALLDQMALHKLNTFHWHLTDDQGWRVEIKRYPKL
TEVGGCRIPAGAAGRDAKGKPKPYCGFYTQDEIRDIVKYAAERYITVVPEFDLPGHAQAA
IASYPEFGVPGTKPPVSPDWGVNTWLFNVDDKTFTFLENVLDEMMPLFPGQYFHLGGDEA
AKDQWEQSAAVQAKKKELGLKDEMQLQSWFMGRLGKYIEAHGKRLIGWDEILEGGPPADA
TVMSWRGTDGAIEAARAGHDVVMAPSPDLYLDHVQSDGPDETPGRLKVISLKDVYDFKAV
PVQLNADQARHVLGVQANLWTEHQRTFERMQRSLFPRGAALAEVTWSPESRLDWNDFLQR
MAFQMERYRLTGFDAADSAFAVRFTPQALEDGKTSLALNNQSGFGTIRYTLDGTEPTATS
QAYVHPLELPLPTTVKANAFADDRALAATRAFELDLHSLRARSSNALRSCKTDLMLRMED
DAPSDGKDGDRRLLLADVFDPCWIYDAAQLDGIATVEVRVGQLPHNYALWKDASKVVTRP
AKIPGGALEVRLGSCEGEPIAVLPLAPARKSDGLTTLSTPLPTQAGRHDLCFTFASGRVQ
PDVGRGRGRAAARGALSEAMKPLSRPRERGGPGRRPSHLAEMALRLALALPITRSGTPER
RDPGPVRVRIAALHRGIHTCLVALFSRRPFWPSPAPCRRKTCRVRRSSTSTPTPTPSDRS
SPCAKPATPPPRNWSRPSSAIRARRAKSPSSRTWRWPPAARTSASSSIRARSVRSIAATR
CGARSCGITAGTCIAPAISTAHSRSGARWSKRVR