Protein Info for ABIE51_RS01435 in Lysobacter sp. OAE881

Annotation: ammonium transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 467 signal peptide" amino acids 1 to 24 (24 residues), see Phobius details transmembrane" amino acids 39 to 61 (23 residues), see Phobius details amino acids 70 to 90 (21 residues), see Phobius details amino acids 132 to 153 (22 residues), see Phobius details amino acids 160 to 184 (25 residues), see Phobius details amino acids 214 to 235 (22 residues), see Phobius details amino acids 254 to 272 (19 residues), see Phobius details amino acids 280 to 301 (22 residues), see Phobius details amino acids 311 to 331 (21 residues), see Phobius details amino acids 336 to 355 (20 residues), see Phobius details amino acids 367 to 387 (21 residues), see Phobius details amino acids 415 to 438 (24 residues), see Phobius details TIGR00836: ammonium transporter" amino acids 37 to 465 (429 residues), 438.3 bits, see alignment E=1.4e-135 PF00909: Ammonium_transp" amino acids 39 to 465 (427 residues), 405.5 bits, see alignment E=1.1e-125

Best Hits

KEGG orthology group: K03320, ammonium transporter, Amt family (inferred from 72% identity to hse:Hsero_0085)

Predicted SEED Role

"Ammonium transporter" in subsystem Ammonia assimilation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (467 amino acids)

>ABIE51_RS01435 ammonium transporter (Lysobacter sp. OAE881)
MFRKPSLAITALLALATPALALAQDAAAAAPVANKGDVAWLLVCAALVIFMTLPGLALFY
GGLVRSKNVLSVLIQTLIVFSLVAILWALYGYSLAFTPGNAFIGGFDRVFAKGLDATAMG
ATFTKGVYIPELVFFVFQGAFACITCALIIGAFAERVKFAGVLVFTVLWFTFAYTPMAHM
VWFFPGPDAFTSNDAVPGVLAQSGFLFARGALDFAGGTVVHINAAVAGLVGSYVIGKRVG
YGREAIKPHNLTQTMVGASILWVGWFGFNAGSALEANAVAAQAFVNTFLATAAAVLGWTA
VEWLSKGKPSMLGAASGAVAGLVAITPAAGFVGLCGAIIIGALAGAVCLWGVNGLKRLLG
ADDALDVFGVHGVGGILGALLTGVFASPSLGGAGIWDYVTETALPEYSIASQVWIQLQGV
LVTVVVSGVVALISFLIVKYTVGLRVSEESEREGLDITSHGESAYEN