Protein Info for ABIE51_RS01230 in Lysobacter sp. OAE881

Annotation: translocation/assembly module TamB domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1314 transmembrane" amino acids 33 to 56 (24 residues), see Phobius details amino acids 1269 to 1289 (21 residues), see Phobius details PF04357: TamB" amino acids 984 to 1313 (330 residues), 194.7 bits, see alignment E=3.1e-61

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1314 amino acids)

>ABIE51_RS01230 translocation/assembly module TamB domain-containing protein (Lysobacter sp. OAE881)
MSQPTPVSETPKDPREARIAELRARRFARMRWLAIRAGILSVAIALAAGVFLYWLLTSIG
GRDLLLAQIVSRLPENATLSWRSVEGPLSGPLTMNGVRFTYDRMVFTADRVHLDPALRPL
FRKRLRLDALQIANAKLEIPKSDEPFELPRWPEVLPEIAPPLELQADDVRVDGFLLTQAG
EKLIDVRTLRGGLDARQGELHVEHLFVDSDRGRFNVHGDYVPRDDYRTDLTASAVLPAAD
GRTPVRIGLVARGDLSRMNVAVAGHVPQPLRASLTLHGRDEPKWRLDADAEGLDIGLLTG
AEASEDDRPLVFSFSADGMGGAADLRGEFRQGDLVATVLPSKVRLENQVLDVQPLALRIF
EGNATLRGTADFTDAENAKFRFAANVRGLTFGGETTTTPAPAPAATNPPASVSARKLQKV
TAPAPAAQTEAVAIGVDADLGFAGTMKAWAAIGNATLRRDGTEATVTFDGRGNDERMTLK
TLQARMPTGTLDGHGEVAWAPSLGWNIDATLAGFDPGYFAPDFKGSINGKLVTQGSTRAD
GGLDISATASNLGGRLRNRPLGGNANFAMRGAGTAGGETTYQGDVALTLGGSRIDAKGTV
GNALDIDAKLTPLVLSDLLPGGAGTLRGTAQIRGPRAAPDITVDLTGSGLKYGDYQAQTL
TAKGRLPWQRGSGDIAVRATGLDVGLPLSSVSLNARGAVEALQVQGDAKGDIGALTLAGN
VARRGNAWQGALSAFQFVPVRGASWRLNEAARFSWDGRNGSLSNSCFVSSGGGSLCANAD
WPRRGLAVKGDGLPLSLAVPYLPEREDGRPWLLRGEIALDGTLRPVGNAWSGQLNVRSSG
GGMKNSERSRREVLSYENLVLKATFDPRRINAELGTAFNSGGRIDARIATGWDDYAPLSG
QISANTSELVWLELFSPDIMDPKGTLDARITLGGTRARPQLGGQARLTKFSTEIPSLAIV
LEDGDVRLDALPDGTARIAGQIRSGEGTLRVDGTLNWQNTSAPLLLTARGQNVLVSDTRD
LHAVASPDVQVRYAAGQPITVTGTVTIPSANIDLERLDQGVSASPDVVVLDPVNPEASAA
SPLDLDLTLVLGDDVQLNGFGLEGGLGGRMRVRSHPGREMTASGQLQVRGRYKAYGQKLD
ITRGELSWSGGPVSDPILNVRAERVIGDITAGVDIRGRASAPTATAWTDPATSQSEALAY
LTLGRPLASASSDESRQVNAASAALSAGGSLIASQLGAKLGLDDAGVSDSRTLGGSVLGF
GKHISPRLYVGYGVSLLGTGQVLMLKYLLRKGFDAQVESSTIESRASLNWRKEK