Protein Info for ABIE51_RS00940 in Lysobacter sp. OAE881

Annotation: ferredoxin reductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 365 signal peptide" amino acids 13 to 30 (18 residues), see Phobius details transmembrane" amino acids 148 to 165 (18 residues), see Phobius details PF00970: FAD_binding_6" amino acids 46 to 139 (94 residues), 51.3 bits, see alignment E=1.9e-17 PF00175: NAD_binding_1" amino acids 151 to 255 (105 residues), 46.9 bits, see alignment E=6.2e-16 PF00111: Fer2" amino acids 285 to 333 (49 residues), 33.3 bits, see alignment 5.8e-12

Best Hits

KEGG orthology group: None (inferred from 55% identity to xal:XALc_2601)

Predicted SEED Role

"Flavodoxin reductases (ferredoxin-NADPH reductases) family 1" in subsystem Anaerobic respiratory reductases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (365 amino acids)

>ABIE51_RS00940 ferredoxin reductase (Lysobacter sp. OAE881)
MSAVLRSSKRPRGLRRLIHACVAPSVFDFWAQRLDRTWTWDRPLARIVERRAESRDAVTL
VLRPNRHWRGFRAGQHVNVSAEIDGTSVTRSYSLSAAPRADGLLAITVKRVEGGKLSTHL
FDNACVGDVLHIGPAFGEMAWPDAHDAGWLLLAAGSGITPLMALVREHATRGMPAPVTLL
YWARTREELCFADELLALADAHPEFAVHCLLTREGEAGAEPAGRLDAAQLSALVPDAAQR
RVYACGPSGFVDTARALLEGSARSFHAEAFTPPARSFEDSGEAVVTLQRSGRTLTVPRGQ
SLLTALEAQGIKPASGCRMGICNTCACGKSAGATRDLATGEIRTEPASALRLCISAAAGD
IELDL