Protein Info for ABIE51_RS00840 in Lysobacter sp. OAE881

Annotation: ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 378 TIGR00229: PAS domain S-box protein" amino acids 12 to 134 (123 residues), 90.3 bits, see alignment E=5.4e-30 PF13188: PAS_8" amino acids 13 to 57 (45 residues), 31.7 bits, see alignment 3.8e-11 PF00989: PAS" amino acids 13 to 124 (112 residues), 63.1 bits, see alignment E=8.4e-21 PF08448: PAS_4" amino acids 19 to 128 (110 residues), 45.9 bits, see alignment E=2.2e-15 PF13426: PAS_9" amino acids 23 to 125 (103 residues), 52.5 bits, see alignment E=1.9e-17 PF08447: PAS_3" amino acids 36 to 117 (82 residues), 53.2 bits, see alignment E=1e-17 PF00512: HisKA" amino acids 152 to 214 (63 residues), 41.7 bits, see alignment E=3.3e-14 PF02518: HATPase_c" amino acids 260 to 371 (112 residues), 89.8 bits, see alignment E=5.7e-29

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (378 amino acids)

>ABIE51_RS00840 ATP-binding protein (Lysobacter sp. OAE881)
MSEIPGQDAGIDRFRLAMDASGVGMAVVDLHGRWLEVNPAFERIFGYDARDIIGTSAASL
THPDDVAMSQSFLRGLVDGNIPALDAQKRYVHRNGDTIWAHVNVSVVRDGEGHPSYLLVQ
VRDISAQHAAELALKARAEAEHAARFAANHQLQLFADAVAHDLRAPLRSIESFSALLADR
ASERLDDTDRDYLGRIRAAASRMSGLLSALNDLAYVTRTELKPVDVDLSLLADWVGAELQ
DAEPQRRADIRVQPSLHAWGDERLLKLMLSQLMGNAWKFSRGREPIRIQVSGRREGRNLQ
VVIRDEGIGFDMRYAHKLFEPFQRLHGPDQGGGHGLGLAIVRRIAERHHGSVRADSTPES
GATFTLELPAQALAEENA