Protein Info for ABIE51_RS00415 in Lysobacter sp. OAE881

Annotation: fimbrial protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 170 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF00419: Fimbrial" amino acids 27 to 170 (144 residues), 50 bits, see alignment E=4e-17 PF16970: FimA" amino acids 50 to 170 (121 residues), 46.8 bits, see alignment E=3.9e-16

Best Hits

Swiss-Prot: 47% identical to SMF1_STRMK: Major fimbrial subunit SMF-1 (smf-1) from Stenotrophomonas maltophilia (strain K279a)

KEGG orthology group: K07345, major type 1 subunit fimbrin (pilin) (inferred from 48% identity to cvi:CV_1294)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (170 amino acids)

>ABIE51_RS00415 fimbrial protein (Lysobacter sp. OAE881)
MKKILLVAVAAAGLVSVAPAFAVDGTITINGAVTGTTCTIANNGNVTVTLPSVSTTSLTA
NGAVAGQKAFALNLSGCAASTKATAYFEPGANIDPATGNLRNATGAGNATNVQVQLYNSD
LSAINLFSNNAKQVTIGTAGPMNFYAGYYATGQATAGTVATSVIYTMTYQ