Protein Info for ABIE51_RS00405 in Lysobacter sp. OAE881

Annotation: fimbria/pilus outer membrane usher protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 894 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details PF13954: PapC_N" amino acids 48 to 192 (145 residues), 145.9 bits, see alignment E=1.3e-46 PF00577: Usher" amino acids 209 to 791 (583 residues), 581.4 bits, see alignment E=3.4e-178 PF13953: PapC_C" amino acids 800 to 866 (67 residues), 65.7 bits, see alignment 4.1e-22

Best Hits

Predicted SEED Role

"type 1 fimbriae anchoring protein FimD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (894 amino acids)

>ABIE51_RS00405 fimbria/pilus outer membrane usher protein (Lysobacter sp. OAE881)
MTLRTGQFVPVPSRVPGRALLGAAIACALLAATAAHAAPAPTAPADAQFDMSLLVGGSQQ
TDLTRFERGNVVMPGMYRLTLFLADEFTGFADVRFESPEPNANALPCMTPELFGALGLPM
EKLDEAARARLDSGCVALPELIPGATATYDQSELRLDVTVPQAWLGYRARGYVSPDQWDD
GVTAGLLNYNANLYRTRSGGLEQTSGFVGLNAGLNLGAWRLRHDGNYNWQSSVDGAPSTH
QYQSISTYARRDIAQWQAQLTLGDSYTSGEMFDSVGVRGVQLSTDDRMLPESQRGYAPTV
RGVAETNARVSIRQNGMLLLETTVSPGPFVIDDLYATGYGGDLTVTVTEADGRVREFQVP
YASVPQLLRPGTSRFSIAAGAVRDDASEDEPMMVQATLQRGLTNRVTGYAGALTTDGYVA
GLGGVALNTSLGAIALDLTAARTKMPTQEAETGQSLRATYSKILPNSGTSFSLASYRYST
SGYYSLREALAARDFALGRPVDTGMDDTLPGVLTPEQREALQGRDARLDAYTSALERQRN
RFDINVSQQLGERGGQLYATASARDYWTREGTDTQFQLGYNNHFRAFNYSVSATRLRNFD
GRYDNQFFVNFSVPLGSSPRAPTLTAGVVRQDDGQQQTQLSVNGTAGEDGRFSYGATAAH
SDEVGSYGSVNGAWRGSAGVLSGSYGEGDGYSQGSVGLMGTLVAHPHGVIAGQPIGDTIA
IISAPNAKGARVVNAPGVRVNRFGQALVPYLTPYQYNSIELDPKGLPLDVQLQSTSARVA
PRAGGVSMLTFETEYGRALLLRVRMGDGRPVPFGAEVTDVQGHALGTVGQGGRLLLRGAM
KEGTVSLSWQEEDKPMQCTFTYQTPEPKPGAAPTALPMADARCTPTVTFAAASL