Protein Info for ABIE51_RS00245 in Lysobacter sp. OAE881

Annotation: tetratricopeptide repeat protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 516 transmembrane" amino acids 122 to 141 (20 residues), see Phobius details PF00486: Trans_reg_C" amino acids 26 to 98 (73 residues), 53.4 bits, see alignment E=6.8e-18 PF13432: TPR_16" amino acids 243 to 290 (48 residues), 18.8 bits, see alignment 5.7e-07 amino acids 341 to 398 (58 residues), 23.1 bits, see alignment 2.6e-08 PF14559: TPR_19" amino acids 341 to 396 (56 residues), 26.1 bits, see alignment 2.7e-09

Best Hits

Predicted SEED Role

"FIG01211965: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (516 amino acids)

>ABIE51_RS00245 tetratricopeptide repeat protein (Lysobacter sp. OAE881)
MTARYRLDDLIIDVPRQRVEREGAPLDVGGLSFRLLEFMLEQGQRVVGFDELIERVWAPA
VVNEETVTQRVRLLRQALGDHGRNSRYLRSVRGRGYQLCVAPQREDEPRIDATPPAPRKR
HIALAGVALIALAISVIAWWMQRPDETKKPQSPLLQRAAYYAGIGQRDDNERAIALYRQR
LQEAPDDRDAMIGLSRALSAEACLYNGEATQLDRAQAMAERVIAADPRNAAAHAALGYSF
DCRGRIDDALRGYERALSLDPSNDGARASAAYLYERRGRLADALAANLAVRDPSRVRFLQ
IQIAANLDLLGYTAEAESRYRRSFQLYPDNVFSNLAWPSFLMRHGRYAEAQAALDEAMKR
GTDHAGLHVLAAELAWSRGDRDTAREEAARAVALRPHSSFPRSVQSTFAQVQPQPAMLRE
QAESLRAGLRDGSDPIDGIDAALLLDTAGDRDAAIAALRDAIAMGYRDAAYLLASPLFAG
LRESPRFDQVLAAIDTAIAREREAVRSRKLDIRAAP