Protein Info for ABIE51_RS00230 in Lysobacter sp. OAE881

Annotation: DUF1328 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 52 transmembrane" amino acids 5 to 24 (20 residues), see Phobius details amino acids 30 to 47 (18 residues), see Phobius details PF07043: DUF1328" amino acids 6 to 44 (39 residues), 58.5 bits, see alignment E=3.3e-20

Best Hits

Swiss-Prot: 85% identical to Y230_XANC8: UPF0391 membrane protein XC_0230 (XC_0230) from Xanthomonas campestris pv. campestris (strain 8004)

KEGG orthology group: None (inferred from 94% identity to smt:Smal_0172)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (52 amino acids)

>ABIE51_RS00230 DUF1328 domain-containing protein (Lysobacter sp. OAE881)
MLSYAVIFFVIAIIAAVLGFSGIAGAASNIAWILFVVFLVLAVISMLRGRRV