Protein Info for ABIE51_RS00220 in Lysobacter sp. OAE881

Annotation: ubiquinone biosynthesis regulatory protein kinase UbiB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 558 transmembrane" amino acids 506 to 525 (20 residues), see Phobius details amino acids 537 to 554 (18 residues), see Phobius details TIGR01982: 2-polyprenylphenol 6-hydroxylase" amino acids 5 to 449 (445 residues), 581.7 bits, see alignment E=3.9e-179 PF03109: ABC1" amino acids 91 to 347 (257 residues), 238.7 bits, see alignment E=2.8e-75

Best Hits

Swiss-Prot: 78% identical to UBIB_XANC8: Probable protein kinase UbiB (ubiB) from Xanthomonas campestris pv. campestris (strain 8004)

KEGG orthology group: K03688, ubiquinone biosynthesis protein (inferred from 78% identity to xcc:XCC0224)

Predicted SEED Role

"Ubiquinone biosynthesis monooxygenase UbiB" in subsystem Ubiquinone Biosynthesis

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (558 amino acids)

>ABIE51_RS00220 ubiquinone biosynthesis regulatory protein kinase UbiB (Lysobacter sp. OAE881)
MKPVFRAWRIGRVLLRYRLDDLLDDTPVEGWLKLARPFVPRASVEVANLSRGARLRMALQ
ELGPIFVKFGQILSTRRDLVPPDVAEELALLQDRVLPFDGETARAIVENALQMPVSQAFA
TFDTTPLASASIAQVHAATLPPDANGVSREIVVKVLRPDIEKQIAGDIALLKAVAGVVNR
THPAADKIRPHLIVEEIENTLAAELDLQREGANASVLRRFWQDSDDLYVPEVIWSHTAER
VLTLERVYGIPSDDIAALDAAGIDRRALAAKGVRVFYTEVFRDNFFHADAHAGNIWVDSD
PARRANPRFIALDFGIVGQLSDEDQYYLAENFMAIFNRDYRRIAELHVRAGWMPSHIRID
ELEAAARAVCEPYFTRPLSEISLAEVLLKLFRTAQRYELTLQPQLILLQKTLLNIEGVGR
LLDPKLDIWAVARPVLQRILVERYSPQRLATEFRKRLPELVTHAPEMPRLLHAWLTQQVE
GRHELNLRSRDLVELNRTIHTAQRKTVAAVLGVGLLICAAVLYGLEAGGPRFWSVPASAW
IAGLGGLWALLAAWPRGR