Protein Info for ABIE51_RS00050 in Lysobacter sp. OAE881

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 463 transmembrane" amino acids 28 to 48 (21 residues), see Phobius details amino acids 58 to 79 (22 residues), see Phobius details amino acids 100 to 119 (20 residues), see Phobius details amino acids 136 to 159 (24 residues), see Phobius details amino acids 180 to 200 (21 residues), see Phobius details amino acids 204 to 223 (20 residues), see Phobius details amino acids 238 to 258 (21 residues), see Phobius details amino acids 264 to 286 (23 residues), see Phobius details amino acids 305 to 351 (47 residues), see Phobius details amino acids 356 to 381 (26 residues), see Phobius details amino acids 386 to 403 (18 residues), see Phobius details amino acids 429 to 451 (23 residues), see Phobius details PF13000: Acatn" amino acids 30 to 171 (142 residues), 49.3 bits, see alignment E=1.6e-17

Best Hits

KEGG orthology group: K08218, MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG (inferred from 63% identity to sml:Smlt0413)

Predicted SEED Role

"AmpG permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (463 amino acids)

>ABIE51_RS00050 MFS transporter (Lysobacter sp. OAE881)
MTSETAPAAEPKLKGWRLVAANLREPKVLVMLLLGFSSGIPIYLVGNTLGYWMRENAIEL
STIGFLSWVGLAYSLKFLWAPLIDKLDAPVLGKWLGRRRGWMLLSQVIVAIALFGMANVQ
PQEGQLVLWGQTLDQLVVFGVLALVVAFASATQDIVIDAWRIEIASSNEQQGLLTATSAL
GYRGALLVTDSLILIFAAHIGWSLSYEVMAALMGVGILATFLAREPAASVQAAAASHGSM
LSAQGIYDAIIAPFVVFFREHGKWALVMLLAISLYRLPDFVLGPMANPFYADLGLDKETV
GAVRGSFGLLATTLGIAAAGLCAVRFGFFTTLMAGAVLGPGSNLAFSYLALHGADAGVFT
AVMVIDNFCSGFAGVALIGYMSSLTSAGYTATQYALLSSFYALPGKVLKGMSGWTIEQLE
VGRSLLEAYSLFFAGTALIGIPALLLCLVLAARRTGARAPAVE