Protein Info for ABCV34_RS15885 in Castellaniella sp019104865 MT123

Annotation: DNA repair protein RadC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 168 TIGR00608: DNA repair protein RadC" amino acids 29 to 168 (140 residues), 147.5 bits, see alignment E=2.4e-47 PF04002: RadC" amino acids 48 to 167 (120 residues), 146.8 bits, see alignment E=1.4e-47

Best Hits

Swiss-Prot: 59% identical to Y1786_VIBCH: UPF0758 protein VC_1786 (VC_1786) from Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)

KEGG orthology group: K03630, DNA repair protein RadC (inferred from 94% identity to pna:Pnap_4157)

Predicted SEED Role

"DNA repair protein RadC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (168 amino acids)

>ABCV34_RS15885 DNA repair protein RadC (Castellaniella sp019104865 MT123)
MSQLSFSLDSSLLVRDITGDYRPANADEVLQAAQRLLGAQLRGREVLSSPQTVRDFLRVK
LGGLEHEVFAVLMLDAQNRLIEYVELFRGTVSQASVYPREVVKESLGFNAAAAIFCHNHP
SGVAEPSRADEMLTQTLKTALSLVDVRVLDHLIVAGNDVMSFAERGLL