Protein Info for ABCV34_RS15820 in Castellaniella sp019104865 MT123

Annotation: site-2 protease family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 217 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 56 to 77 (22 residues), see Phobius details amino acids 98 to 119 (22 residues), see Phobius details amino acids 138 to 158 (21 residues), see Phobius details amino acids 183 to 206 (24 residues), see Phobius details PF02163: Peptidase_M50" amino acids 135 to 194 (60 residues), 33.1 bits, see alignment E=1.9e-12

Best Hits

KEGG orthology group: None (inferred from 75% identity to put:PT7_0169)

Predicted SEED Role

"FIG004556: membrane metalloprotease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (217 amino acids)

>ABCV34_RS15820 site-2 protease family protein (Castellaniella sp019104865 MT123)
MDQLIQTIAVYALPVLFAITLHEAAHGYVARFFGDPTAQQAGRISLNPLRHIDPVGTIVV
PLVLLFVTRFMGGGLLFGWAKPVPVDWSRLRRPKQDMLWVALAGPASNLFMAIVWVLLWR
LMLSMGLIQSGSDFWSRMAYAGVQVNLILMALNLIPLPPLDGGRIVFSLLPPRMAWQYGR
IEPYGLVILVVLMMTGWLSPLMAPLLQLGGWIVNRFL