Protein Info for ABCV34_RS15275 in Castellaniella sp019104865 MT123

Annotation: EamA/RhaT family transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 298 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 31 to 47 (17 residues), see Phobius details amino acids 59 to 82 (24 residues), see Phobius details amino acids 94 to 111 (18 residues), see Phobius details amino acids 119 to 137 (19 residues), see Phobius details amino acids 162 to 181 (20 residues), see Phobius details amino acids 193 to 211 (19 residues), see Phobius details amino acids 218 to 240 (23 residues), see Phobius details amino acids 252 to 273 (22 residues), see Phobius details amino acids 279 to 296 (18 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 57% identity to axy:AXYL_05175)

Predicted SEED Role

"Integral membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (298 amino acids)

>ABCV34_RS15275 EamA/RhaT family transporter (Castellaniella sp019104865 MT123)
MHTLILSISFSVAVSVFLKLARRCDVRIEQAILVNYVTACLLCLWLLRPPLATLFDQSAT
VWIILGLLGVLLPTVFLVMAAAVRQAGIVLSDTAQRLSLVIPILAAFLVFHESLSGRKAL
GIVLALGALACLLKRTPTGTAAAPSLGERAANNAAGSPRARWAWLSLLGVWVGYGTIDIL
FKQMARTGARFTSSLLLSFMLAALLMILWLAARRTAWHARSLASGILLGALNFSNIYFYI
RAHQTYPQNPTLVFAAMNIGVISIGTLVGAGVFRERLSRANLAGIALAIGAVVLLFPR