Protein Info for ABCV34_RS14510 in Castellaniella sp019104865 MT123

Annotation: thiazole synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 267 transmembrane" amino acids 152 to 171 (20 residues), see Phobius details PF05690: ThiG" amino acids 8 to 256 (249 residues), 353.1 bits, see alignment E=3.9e-110

Best Hits

Swiss-Prot: 80% identical to THIG_BORBR: Thiazole synthase (thiG) from Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)

KEGG orthology group: K03149, thiamine biosynthesis ThiG (inferred from 80% identity to bbr:BB4459)

Predicted SEED Role

"Thiazole biosynthesis protein ThiG" in subsystem Thiamin biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (267 amino acids)

>ABCV34_RS14510 thiazole synthase (Castellaniella sp019104865 MT123)
MTTPDTLTIADRSFQSRLLVGTGKYRDFKETRQAIEASGAEIVTVAIRRTNIGQNPGEPN
LLDFLSPDRYTILPNTAGCYTADDAVRTLRLARELLDGHKLCKLEVLGDAGNLFPNMPET
LAAARTLVADGFDVMVYCSDDPIQCRMLEDIGVAAVMPLASLIGSGMGIINPWNLRLIID
QARVPVLVDAGVGTASDAAIAMELGCDAILMNTAIAGAREPIRMARAMRLAVEAGREAYL
AGRVKRKYYDADPSSPKEGLLPSTRAA