Protein Info for ABCV34_RS14140 in Castellaniella sp019104865 MT123

Annotation: branched-chain amino acid ABC transporter ATP-binding protein/permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 644 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 34 to 52 (19 residues), see Phobius details amino acids 58 to 76 (19 residues), see Phobius details amino acids 82 to 101 (20 residues), see Phobius details amino acids 109 to 126 (18 residues), see Phobius details amino acids 155 to 171 (17 residues), see Phobius details amino acids 205 to 224 (20 residues), see Phobius details amino acids 231 to 248 (18 residues), see Phobius details amino acids 255 to 271 (17 residues), see Phobius details amino acids 277 to 296 (20 residues), see Phobius details amino acids 307 to 326 (20 residues), see Phobius details amino acids 332 to 354 (23 residues), see Phobius details PF02653: BPD_transp_2" amino acids 32 to 271 (240 residues), 137.5 bits, see alignment E=7.6e-44 PF00005: ABC_tran" amino acids 404 to 565 (162 residues), 107.7 bits, see alignment E=1.1e-34 PF12399: BCA_ABC_TP_C" amino acids 613 to 637 (25 residues), 44.6 bits, see alignment (E = 1.3e-15)

Best Hits

Predicted SEED Role

"Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (644 amino acids)

>ABCV34_RS14140 branched-chain amino acid ABC transporter ATP-binding protein/permease (Castellaniella sp019104865 MT123)
MNKKSLLSFALLVVVLASIPLVVANPYYLHLVETILIYAVLLLGLDIVVGYTGQVSLGHA
GLFGIGAYTVGALILHLDMPFWVAIPAAIAVTSIFGAILALPALRVTGPYLAMVTLAFGT
IIQILINEMDFLTAGPLGISLDKPMIGNHMLTGPEFFWLVLGLLSLSVLFTERVARSHYG
RAFEALRDSPIACDCMGVSVYRYKVVAFVISAGLAGLSGALHAYSEQYISPNTYTFELMV
LFLLAIIMGGRKTRSGALLGAAIIVLLPKMLDDVSTFRPLAIGLAIIVVAGAVWAVRQGR
ATPRRMAAPVVGVLLLAVGSLVLTQMTDWRLSIFGLMILFVVYYLPDGIVGFVIQSVGRR
RRTDDALAASVVPLATGVQRADTSQGVLLSVSRAVMQFGGLKALNEVDLQVQRGTIHGLI
GPNGSGKSTMMNVLTGIYVPTSGSVVFAGRDLAGLTSSQIAARGVARTFQNVQLFGEMTA
LENVLVGLHHTFRSRLAGVALRLPGWRREEQAARDRAHALLNFVGLDALANEEARNLPYG
KQRLLEIARALALDPQLLLLDEPAAGLTAPDIEELLAIMRKIKERGLTVILIEHHMDVVM
GVCDAVSVLDFGQKIAEGLPADVQADPRVVEAYLGGEQAEAQAC