Protein Info for ABCV34_RS13100 in Castellaniella sp019104865 MT123

Annotation: ABC transporter permease subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 390 transmembrane" amino acids 17 to 40 (24 residues), see Phobius details amino acids 94 to 115 (22 residues), see Phobius details amino acids 127 to 152 (26 residues), see Phobius details amino acids 187 to 205 (19 residues), see Phobius details amino acids 216 to 236 (21 residues), see Phobius details amino acids 258 to 278 (21 residues), see Phobius details amino acids 307 to 312 (6 residues), see Phobius details amino acids 314 to 316 (3 residues), see Phobius details amino acids 332 to 338 (7 residues), see Phobius details amino acids 358 to 380 (23 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 84 to 150 (67 residues), 59.1 bits, see alignment E=2.6e-20 PF00528: BPD_transp_1" amino acids 258 to 384 (127 residues), 45.6 bits, see alignment E=3.4e-16

Best Hits

KEGG orthology group: K09970, general L-amino acid transport system permease protein (inferred from 54% identity to mhd:Marky_1471)

Predicted SEED Role

"Glutamate Aspartate transport system permease protein GltJ (TC 3.A.1.3.4)" (TC 3.A.1.3.4)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (390 amino acids)

>ABCV34_RS13100 ABC transporter permease subunit (Castellaniella sp019104865 MT123)
MKAGGSQERYTLGDHVLQIGVVLGAIAIVLGLAASVYIGLASHHIPIDFSFLSQVSGLHL
SEGLTLDLSRPWDLVPFSSSDTNLQALILGLYNTLKVALLGIVFSTLLGLLVGIGRVSPN
WLLNRVCLVFVDLVRNTPLLIQLFFWYFAVVLQLPALRSAAQFYGVIASRQGIYTPSLLG
VPAWPDFWWAALASLVLAAVILRLTRRPGARAFRWPGIAVIAIAWGVALAALGHPLRIDL
PVASRFRASGGLAFTPEFSAILLALVVYTAAFIAEIVRGSIEAVSTRQWMAAYALGLKRH
QAMTHIILPQAFRILVPPLVNQYLNLAKNTSLAIAIGFPDLFNVYGTVANQTGRSMEGIL
IVMVAYLALNWLISLVMNLYNRRLMAQGAR