Protein Info for ABCV34_RS12955 in Castellaniella sp019104865 MT123

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 430 PF00005: ABC_tran" amino acids 68 to 199 (132 residues), 76.9 bits, see alignment E=2.6e-25 PF14524: Wzt_C" amino acids 283 to 386 (104 residues), 33.3 bits, see alignment E=4.5e-12

Best Hits

KEGG orthology group: K09691, lipopolysaccharide transport system ATP-binding protein (inferred from 66% identity to rlt:Rleg2_0407)

Predicted SEED Role

"Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40)" in subsystem Rhamnose containing glycans or Teichoic and lipoteichoic acids biosynthesis (EC 3.6.3.40)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.6.3.40

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (430 amino acids)

>ABCV34_RS12955 ABC transporter ATP-binding protein (Castellaniella sp019104865 MT123)
MTTPVVIRAEHVSKQYRLGVINHGTLYRDLQSWYARWRGQPDPNASLSEMSQQRGAASRT
VGDRFRALDDVSFEIRQGDVTGIIGSNGAGKSTLLKVISRITDPTSGRITLKGRVASLLE
VGTGFHPELTGRENVFLNGAILGMRRHEVAAKFERIVEFAEIGRFIDTPVKRYSSGMYVR
LAFSVAAHLEPEILLVDEVLAVGDASFQKKCMGRMQEVGRDGRTILFVSHNMTAINSICP
NTICVEDGRVAEIGPTSMVVQNYLARGQVGANGVYMHKPEDLDGKAIIYKVASVDATGRE
SGALDLSQEFSIEIQYELREVLSGIHLSLQILAEDGYTSIFSVSDVELQPDLLNPRQPGR
YRANVKFPSCALNTGAYYVYVGLASRFSIFSTVSNLRVEVIDRVGIIQMLGHARKPSVSA
MQFPWTTERI