Protein Info for ABCV34_RS12815 in Castellaniella sp019104865 MT123

Annotation: acyl-CoA dehydrogenase family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 380 PF02771: Acyl-CoA_dh_N" amino acids 9 to 118 (110 residues), 73.4 bits, see alignment E=3.8e-24 PF02770: Acyl-CoA_dh_M" amino acids 123 to 215 (93 residues), 86.2 bits, see alignment E=2.7e-28 PF00441: Acyl-CoA_dh_1" amino acids 229 to 378 (150 residues), 160.6 bits, see alignment E=6.6e-51 PF08028: Acyl-CoA_dh_2" amino acids 246 to 366 (121 residues), 91.3 bits, see alignment E=1.3e-29

Best Hits

Swiss-Prot: 43% identical to ACRC_CLOPR: Acryloyl-CoA reductase (NADH) (acrC) from Clostridium propionicum

KEGG orthology group: None (inferred from 72% identity to dac:Daci_0142)

MetaCyc: 43% identical to propionyl-CoA dehydrogenase (Anaerotignum propionicum)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (380 amino acids)

>ABCV34_RS12815 acyl-CoA dehydrogenase family protein (Castellaniella sp019104865 MT123)
MNPRLGVSDDDLEIAAAIGRYATAELAPLAAELDEQARSATCHLPGLSALGVMGMNLPER
WGGPGVSPTALVLAIVEIARCCAATASMIGAHYLATDSVLIGGDDALRARYLPRAAQGVI
LGAFALTEPRAGSNPADMSTRARRDGDHYHLSGVKHFISNAGEADFIVVYAKTDAQAGSR
GISAFVVDKDAPGLQISQPEKLMGIRGGHAFELALDCRVPATQRLGEEGSGFRTAMKVLD
NSRLDVAATSLGIAEAALAAAVSWSRERLIGGEPLAEKQGIQWMLADMKLRLEAAWALTL
QATHKRGSGERFSLESAMAKLVASEAVGFITDRALQIHGGYGYTRDMPLERYVRDARILR
IYEGSSEIQRTIIARHMLAA