Protein Info for ABCV34_RS12800 in Castellaniella sp019104865 MT123

Annotation: amino acid ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 220 transmembrane" amino acids 20 to 45 (26 residues), see Phobius details amino acids 56 to 76 (21 residues), see Phobius details amino acids 83 to 104 (22 residues), see Phobius details amino acids 138 to 157 (20 residues), see Phobius details amino acids 183 to 203 (21 residues), see Phobius details TIGR01726: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family" amino acids 14 to 109 (96 residues), 97.4 bits, see alignment E=2.9e-32 PF00528: BPD_transp_1" amino acids 33 to 202 (170 residues), 71.8 bits, see alignment E=3.1e-24

Best Hits

KEGG orthology group: None (inferred from 62% identity to bxe:Bxe_B1821)

Predicted SEED Role

"Cystine ABC transporter, permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (220 amino acids)

>ABCV34_RS12800 amino acid ABC transporter permease (Castellaniella sp019104865 MT123)
MALDFSVVSQYGGQILDGFGITIISWVGAVALGMVVGFAIAVLQLFTGRWIRAVLRVYIE
ILRTTPFLVQLFVLYYGGPNFGVSLSALDAGVVSLALYGSAYFAEIFRSGFLSVPHGQIE
AADCLGLSRISTIWRVQLPQMLVIITPALINMIIILSKETSVLSIITVPELTAVLTQIGS
EQFIYVETTLVLCVCYLMLVAVTQKLGGWAELKASRYLQR