Protein Info for ABCV34_RS12660 in Castellaniella sp019104865 MT123

Annotation: ribosome biogenesis GTP-binding protein YihA/YsxC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 207 TIGR03598: ribosome biogenesis GTP-binding protein YsxC" amino acids 7 to 197 (191 residues), 196.7 bits, see alignment E=1.4e-62 PF01926: MMR_HSR1" amino acids 26 to 151 (126 residues), 49.7 bits, see alignment E=1.8e-17

Best Hits

Swiss-Prot: 74% identical to ENGB_BORPA: Probable GTP-binding protein EngB (engB) from Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)

KEGG orthology group: K03978, GTP-binding protein (inferred from 81% identity to put:PT7_2858)

Predicted SEED Role

"GTP-binding protein EngB" in subsystem Universal GTPases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (207 amino acids)

>ABCV34_RS12660 ribosome biogenesis GTP-binding protein YihA/YsxC (Castellaniella sp019104865 MT123)
MSLLHRARFTVSAARLDQLPPPTTAEVCFAGRSNSGKSSAINVLTNQRRLAFSSKTPGRT
RLINLFGIPDPMTPDAWLGFLVDLPGYGYAAVDRAARDEWAEVLGGYLHERSSLAGVVLL
IDIRRGVTDLDRRLAHWIGLRGLPTLALLTKADKLPYGQRVRAVAQARKDLAEIGTLAAL
PFSATHRIGLDEAAAHIENWISPQVVP