Protein Info for ABCV34_RS12630 in Castellaniella sp019104865 MT123

Annotation: cytochrome bc complex cytochrome b subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 461 transmembrane" amino acids 40 to 64 (25 residues), see Phobius details amino acids 91 to 114 (24 residues), see Phobius details amino acids 124 to 146 (23 residues), see Phobius details amino acids 153 to 176 (24 residues), see Phobius details amino acids 191 to 213 (23 residues), see Phobius details amino acids 252 to 270 (19 residues), see Phobius details amino acids 315 to 332 (18 residues), see Phobius details amino acids 339 to 356 (18 residues), see Phobius details amino acids 362 to 381 (20 residues), see Phobius details amino acids 397 to 415 (19 residues), see Phobius details amino acids 422 to 443 (22 residues), see Phobius details PF00033: Cytochrome_B" amino acids 30 to 218 (189 residues), 220.4 bits, see alignment E=2.8e-69 PF13631: Cytochrom_B_N_2" amino acids 100 to 272 (173 residues), 152.7 bits, see alignment E=1.5e-48 PF00032: Cytochrom_B_C" amino acids 285 to 331 (47 residues), 49.6 bits, see alignment 6e-17 amino acids 354 to 434 (81 residues), 88.7 bits, see alignment E=4.1e-29

Best Hits

KEGG orthology group: K00412, ubiquinol-cytochrome c reductase cytochrome b subunit [EC: 1.10.2.2] (inferred from 85% identity to put:PT7_3106)

Predicted SEED Role

"Ubiquinol--cytochrome c reductase, cytochrome B subunit (EC 1.10.2.2)" in subsystem Ubiquinone Menaquinone-cytochrome c reductase complexes (EC 1.10.2.2)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.10.2.2

Use Curated BLAST to search for 1.10.2.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (461 amino acids)

>ABCV34_RS12630 cytochrome bc complex cytochrome b subunit (Castellaniella sp019104865 MT123)
MAENNVETTGLLGWVDRRFPLTKMFKEHMSEYYAPKNFNFWYFFGSLALLVLVLQVVTGI
FLVMNYKPDARFAFESVEYIMREVPGGWFIRYMHSTGASMFFVVVYLHMLRGLFYGSYRK
PRELVWIFGVGIFLSLMGEAFFGYLLPWGQMSYWGAQVIVNLFSAIPFIGPDLSLWIRGD
YVVSDATLNRFFSFHVIAIPLVLIGLVVAHIIALHEVGSNNPDGVEIKQGPKDKYGHPVD
GIPFHPYYSVHDVVGVAGFLIVFAAIIFFGPEMGGYFLEYNNFIPADPLKTPPHIAPVWY
FTPFYTMLRATTSDFTWVLSAGAVIAALALFVKGKLSGIWRLAVPAILIIVAILMRTLDA
KFWGVVSMGGAVVILFFLPWLDHSPVKSIRYRPSWHKFLYAVFIADFLILGWLGTQPVTP
TFTTLGQICSVIYLAFFLAMPVWSRLGTFKPVPTRVTFRAH