Protein Info for ABCV34_RS12540 in Castellaniella sp019104865 MT123

Annotation: TRAP transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 674 transmembrane" amino acids 15 to 34 (20 residues), see Phobius details amino acids 40 to 59 (20 residues), see Phobius details amino acids 66 to 85 (20 residues), see Phobius details amino acids 97 to 114 (18 residues), see Phobius details amino acids 122 to 141 (20 residues), see Phobius details amino acids 174 to 195 (22 residues), see Phobius details amino acids 269 to 288 (20 residues), see Phobius details amino acids 294 to 314 (21 residues), see Phobius details amino acids 337 to 355 (19 residues), see Phobius details amino acids 361 to 378 (18 residues), see Phobius details amino acids 388 to 422 (35 residues), see Phobius details amino acids 444 to 470 (27 residues), see Phobius details amino acids 482 to 502 (21 residues), see Phobius details amino acids 506 to 554 (49 residues), see Phobius details amino acids 566 to 586 (21 residues), see Phobius details amino acids 596 to 618 (23 residues), see Phobius details amino acids 629 to 658 (30 residues), see Phobius details TIGR02123: TRAP transporter, 4TM/12TM fusion protein" amino acids 14 to 665 (652 residues), 730.4 bits, see alignment E=1e-223 PF06808: DctM" amino acids 108 to 370 (263 residues), 199.4 bits, see alignment E=4.7e-63 amino acids 388 to 589 (202 residues), 89.2 bits, see alignment E=1.3e-29

Best Hits

KEGG orthology group: None (inferred from 64% identity to tmz:Tmz1t_0432)

Predicted SEED Role

"TRAP transporter, 4TM/12TM fusion protein, unknown substrate 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (674 amino acids)

>ABCV34_RS12540 TRAP transporter permease (Castellaniella sp019104865 MT123)
MSSAHDLADQPMPRSVFWIAVIFSCFQIWTAAYSPLSSQVIRAIHVGFVLLMVFSLYSGR
QGSPRAIIGWVLGILGFGLSLYHWVYEADLTARAGQMTDADMVVGILTLILVFEATRRMM
GWALPIICGLFLAYGLFGQYIPGPFMHRGFGLDQIVGTLGFGVEGIYGTPTYVSSTYIFL
FILFGAFLEQAGMIQLFSDFSMGLVGHSRGGPAKVSVVSSGLMGTINGSGVANVVTTGQF
TIPLMKRFGYSSAFAGGVEATSSMGGQIMPPVMGAVAFIMAETLNIPYVDVVKAAIIPAI
LYFATAFLTVHLEAGRRGLHGLAKEDCPDPWAAVRKSWYLLLPLIGLVVLLFSGYTPLFS
GTIGLGLTVILIFGAAIIQGARPMILRYVFWLLLGIACAGFIQFGVTDFFVIVAVLALAL
LFRQHGRDALKLAVNSLADGARNALSVAAACALVGVIIGIINLTGVAAEFGGQVIAIGEN
NLFLALVLTMITCLVLGMGIPTIPNYIITSSLAAPILFKLGVPLIISHMFVFYFGIMADL
TPPVALAAFAAAPIARENGLKISIQALRVAAAGFVVPYMAVYSPALMLQGGSLWDVAYIV
FKALLAITLWAAGITGFLKTRLNAYERVYVVLAAALLVAAVPMTDELGFAATAIFLIWHL
TRSRRVPPTRAQAA