Protein Info for ABCV34_RS12485 in Castellaniella sp019104865 MT123

Annotation: ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 398 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF13458: Peripla_BP_6" amino acids 23 to 360 (338 residues), 350.1 bits, see alignment E=3.1e-108 PF01094: ANF_receptor" amino acids 46 to 324 (279 residues), 48.2 bits, see alignment E=1.3e-16 PF13433: Peripla_BP_5" amino acids 155 to 359 (205 residues), 56.2 bits, see alignment E=4.8e-19

Best Hits

KEGG orthology group: K01999, branched-chain amino acid transport system substrate-binding protein (inferred from 59% identity to mno:Mnod_0709)

Predicted SEED Role

"Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (398 amino acids)

>ABCV34_RS12485 ABC transporter substrate-binding protein (Castellaniella sp019104865 MT123)
MKKMLIAAVLALALPQWAAAAAPLRIGVLNDQSGLYSDFGGVTSVTAAEMAVKDFGGEVL
GRKIEVVSADHHNKVDAASAIARKWFDLEHVEMITDLTNSGVALAVQGLAKEMGKITIAT
GPFSAALTDKACSPTGFHWVFDTYAASVGTARGVIEDGGKTWFILAADYAFGKQMAADLT
KTINANGGRVLGEVRHPVESSDFASFLLQAQSSGAQVIALANGGLDTTNSIKQASEFGIT
SGGQRLVALAMVISDVHALGLQKAHGLVATTAYYWDRDDASREFAKRFQALTKRMPGMVQ
AGTYSAVMHYLKAVKAAGTADGKVVAQKMHEMPVNDFFAPHGVVRPDGRMAHDMYLVQVK
TPAESKGPWDYYKILRTLPTELVTRPLSESQCPLINKS