Protein Info for ABCV34_RS11890 in Castellaniella sp019104865 MT123

Annotation: membrane protein insertase YidC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 579 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 388 to 409 (22 residues), see Phobius details amino acids 453 to 475 (23 residues), see Phobius details amino acids 496 to 516 (21 residues), see Phobius details amino acids 528 to 551 (24 residues), see Phobius details TIGR03593: membrane protein insertase, YidC/Oxa1 family, N-terminal domain" amino acids 3 to 116 (114 residues), 73.9 bits, see alignment E=1.9e-24 amino acids 140 to 387 (248 residues), 244.4 bits, see alignment E=2.9e-76 PF14849: YidC_periplas" amino acids 139 to 377 (239 residues), 228.7 bits, see alignment E=1.4e-71 TIGR03592: membrane protein insertase, YidC/Oxa1 family" amino acids 388 to 567 (180 residues), 221.8 bits, see alignment E=7.9e-70 PF02096: 60KD_IMP" amino acids 389 to 567 (179 residues), 200.8 bits, see alignment E=1.5e-63

Best Hits

Predicted SEED Role

"Inner membrane protein translocase component YidC, long form"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (579 amino acids)

>ABCV34_RS11890 membrane protein insertase YidC (Castellaniella sp019104865 MT123)
MDIRRTILWMIFSFSLLLLWNNWQVYQGQPSLFSLTPPAAEKAKTASAPTPAPHPSGSTT
VPAGAAQNAPGGVGAPAALAAGQKVHVKTDVFDLTFDTLGAQLVQADLLGYRNQEATTGI
LPWFKGLMGKAPPKDAHGAMYLLNDQPGDMYVAQTGLVGAPAGATYPTHLTPFTLVGSGP
VVKGNTTEVSFEATSDQVRVVKTFILTQGSYDIRVRNDIYNLGDQPIDPSLYLQLTRDGH
EPSNTTGFYSTFTGAAVYSAEDKFQKVKFDEITKGKASYITQADNGWIGIVQHYFASAWV
PKQGVVRTNQALALPDGLFAVRSIEAVGSIAPGAQKSVESQLWVGPQDQLAMSAVAPGLD
VVVDYGWVTIIAKPMFKFMIWLHSLVGNWGWTIVLLTLLIKLVFYPLSAASYRSMAKMKL
VSPRMQHLKEKFGDDKAKLNAAMMEMYRTEKINPLGGCLPMVVQIPVFIALYWVLLGSVE
MRGAPWILWIHDLSVADPWFILPAFMMLTMFLQIKLNPTPPDPTQAKIMMIMPLVFGGMM
FLFPAGLVLYWCVNNTVSIIQQRVIMRRLDREKAASASS