Protein Info for ABCV34_RS11710 in Castellaniella sp019104865 MT123

Annotation: ParB/RepB/Spo0J family partition protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 313 TIGR00180: ParB/RepB/Spo0J family partition protein" amino acids 36 to 208 (173 residues), 191.2 bits, see alignment E=7.6e-61 PF02195: ParBc" amino acids 38 to 128 (91 residues), 102.6 bits, see alignment E=1.1e-33 PF17762: HTH_ParB" amino acids 179 to 227 (49 residues), 58.4 bits, see alignment 5.3e-20

Best Hits

Swiss-Prot: 51% identical to PARB_PSEPK: Probable chromosome-partitioning protein ParB (parB) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)

KEGG orthology group: K03497, chromosome partitioning protein, ParB family (inferred from 67% identity to bpt:Bpet4974)

Predicted SEED Role

"Chromosome (plasmid) partitioning protein ParB" in subsystem Bacterial Cytoskeleton or Plasmid replication or Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (313 amino acids)

>ABCV34_RS11710 ParB/RepB/Spo0J family partition protein (Castellaniella sp019104865 MT123)
MATRKKGLGRGLDALLGADHGALDAVGARGAHDAPSHLPIKVLRAGRYQPRTRMDEGALN
DLADSIRAQGVMQPILVRPLETDPGQYEIIAGERRFRAAQIAGLDEIPVMVRQVADENAA
AMALIENIQREDLNPLEEAHGVRRLLDEFGLTHEQAASAIGRSRSATTNLLRLLNLAGPV
QTMLLAGDIDMGHARALLATDAARQILLAHEVVARRLSVRETEKRVARALREDDETVATP
AGRVAKAEPKPSHGDLERLEKSLSDHLATKVRIKAAARKGGQLIIEFVDWEHLDALLDRQ
GMGRVMDQQDQNA