Protein Info for ABCV34_RS11570 in Castellaniella sp019104865 MT123

Annotation: LysR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 316 PF00126: HTH_1" amino acids 13 to 71 (59 residues), 66.2 bits, see alignment E=2e-22 PF03466: LysR_substrate" amino acids 100 to 297 (198 residues), 58.9 bits, see alignment E=4.7e-20

Best Hits

KEGG orthology group: None (inferred from 56% identity to bcj:BCAS0361)

Predicted SEED Role

"LysR-family transcriptional regulator"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (316 amino acids)

>ABCV34_RS11570 LysR family transcriptional regulator (Castellaniella sp019104865 MT123)
MPDPLLERLPETKLLRLFDALYAQGSVTAVAQLLGLSQPTISIWLAQLREQLGDPLFVRT
SGGMSPTPRAEALIGLVRETLDALRQIGGAAPDFDPMRSERRFCVAMSDASHVNLLPHLL
GHLRRTATACGLKAGPIDSTLAERLQSGAADLALGLIPGLGAGFYQQTLFTQDWVCLARA
GHPRIRAALDLADYRREGHIEIASGTGHELLENALRRARLTREVVLELPGFLGLSAVLET
SDLLVTVPRQTGETLSSRKTIHLHACPFPIAPFSVKQHWHARFHQDPGNRWLRQSCMALF
GDPQAPTHPATTNPTS