Protein Info for ABCV34_RS11390 in Castellaniella sp019104865 MT123

Annotation: TetR/AcrR family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 253 PF00440: TetR_N" amino acids 13 to 59 (47 residues), 58.3 bits, see alignment 5e-20 PF17939: TetR_C_30" amino acids 94 to 209 (116 residues), 79.6 bits, see alignment E=2.3e-26

Best Hits

KEGG orthology group: None (inferred from 54% identity to dar:Daro_1543)

Predicted SEED Role

"Predicted transcriptional regulator for fatty acid degradation FadQ, TetR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (253 amino acids)

>ABCV34_RS11390 TetR/AcrR family transcriptional regulator (Castellaniella sp019104865 MT123)
MTISRSTLTRDAILDAAERLFAEQGHDKTSMRQITRAAQVNLSAVNYHFGSKDALIEAVF
ERRLDALNDERLRILDTLESEAKGQALKPSAIVEAYFGPLVRHACSAGAERRAFMPLQTT
SLSDPNGAISALFQAERSMVAHRFTRALLTSLPGVPEAEIVWRFHFMLGATAYAIMGAES
SSQVLNLQGDSSPTADALLSRLMAFLLGGLRAPLPTQTPSLPDLPDGQSQSQTGRVGGMT
AGRNSAVPAQGDL