Protein Info for ABCV34_RS11200 in Castellaniella sp019104865 MT123

Annotation: ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 218 signal peptide" amino acids 1 to 33 (33 residues), see Phobius details PF05494: MlaC" amino acids 48 to 211 (164 residues), 181.5 bits, see alignment E=5.7e-58

Best Hits

KEGG orthology group: K07323, putative toluene tolerance protein (inferred from 54% identity to axy:AXYL_00196)

Predicted SEED Role

"Uncharacterized ABC transporter, auxiliary component YrbC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (218 amino acids)

>ABCV34_RS11200 ABC transporter substrate-binding protein (Castellaniella sp019104865 MT123)
MMISPFFNLRRIGQLCLLSATLGLGALPIAHAERPVDPKAAPDVFLSSVADNMLEAVKAD
PKAIQGDVSHITAIVRKYALPYVDMNKTTRLAAGRYWRQASAEQQSELVKAFTGTLIRTY
SGAFTRVTPSTTITLQPFREGNQANDAVVRTLVSQPNGAPIGVDYRLEHTDAGWKVYDLN
VEGIWLIQNYRNQFSQEIGNSGIDGLIKALNAKSGQSQ