Protein Info for ABCV34_RS10850 in Castellaniella sp019104865 MT123

Annotation: rod shape-determining protein RodA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 391 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details transmembrane" amino acids 49 to 69 (21 residues), see Phobius details amino acids 76 to 94 (19 residues), see Phobius details amino acids 109 to 127 (19 residues), see Phobius details amino acids 138 to 155 (18 residues), see Phobius details amino acids 161 to 178 (18 residues), see Phobius details amino acids 183 to 201 (19 residues), see Phobius details amino acids 284 to 305 (22 residues), see Phobius details amino acids 320 to 344 (25 residues), see Phobius details amino acids 350 to 373 (24 residues), see Phobius details TIGR02210: rod shape-determining protein RodA" amino acids 16 to 373 (358 residues), 414.4 bits, see alignment E=2e-128 PF01098: FTSW_RODA_SPOVE" amino acids 21 to 374 (354 residues), 336.2 bits, see alignment E=1.2e-104

Best Hits

KEGG orthology group: K05837, rod shape determining protein RodA (inferred from 74% identity to put:PT7_2390)

Predicted SEED Role

"Rod shape-determining protein RodA" in subsystem Bacterial Cytoskeleton or Peptidoglycan Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (391 amino acids)

>ABCV34_RS10850 rod shape-determining protein RodA (Castellaniella sp019104865 MT123)
MKIIVLMARRMLAVLDWPLLILLVLMALVGMATMHSAVGNTDWRFADQLRNFLIAFVAMW
AVALMRPAFIMRTAPYFYVGGIVLLTAVTLFGVTSKGATRWLDLGFGRIQPSEMMKIAVP
LMLAWYFQRQSGDRFRLRDFLVAGLLLLVPAGLIIEQPDLGTALLVLASGFCVIYFAGFP
FKLLAPVVLAVVVGLGTLVSYEDQICQPDVDWVVLHDYQKYRVCVLLNPGSDPLGKGFHT
IQSMIAVGSGGVYGKGYMQGTQSHLDFIPERTTDFIFAVFAEEFGLYGGVMLLALYALMV
LRGLTITVRAPTQFGRLLGGAMSMMMFIYVFVNIGMVTGVLPVVGVPLPFMSYGGTALMT
LGIACGLLMSIGAYQPRYGSDADPRWESSGR