Protein Info for ABCV34_RS10840 in Castellaniella sp019104865 MT123
Annotation: ABC transporter permease
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
KEGG orthology group: K09811, cell division transport system permease protein (inferred from 60% identity to put:PT7_2388)Predicted SEED Role
"Cell division protein FtsX" in subsystem Bacterial Cell Division
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (302 amino acids)
>ABCV34_RS10840 ABC transporter permease (Castellaniella sp019104865 MT123) MNRWLRHHRYALQVSLRRLWLHPFSSLANIVVIALMLTVPILGASVLQSSQPLARQLAVA PELTLFLSPGTPAPQQQALLERLRAQAGDKISQARLLPRDQAMAQLRADPTWAQALDALA DNPLPDALIVTLRDSDAPAREAQALADTWRQWPGIDHVQLDSEWVRRLESLLSFVKVGLG LLAIAVLVVVLATVFNTVRLQALTQRNEIAVARLVGATESFVRRPFLYLGALTGLAASLL SLLLAWLALTPLNTLLGRFAESYGIDWTMHLPDTADLLLSGLLVVIMGAVAARLSVTRHT QF