Protein Info for ABCV34_RS10530 in Castellaniella sp019104865 MT123

Annotation: branched-chain amino acid ABC transporter substrate-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 385 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF13433: Peripla_BP_5" amino acids 27 to 349 (323 residues), 59.8 bits, see alignment E=4e-20 PF13458: Peripla_BP_6" amino acids 27 to 360 (334 residues), 213.6 bits, see alignment E=9.8e-67 PF01094: ANF_receptor" amino acids 48 to 355 (308 residues), 97.7 bits, see alignment E=1.1e-31

Best Hits

KEGG orthology group: None (inferred from 58% identity to bcm:Bcenmc03_5995)

Predicted SEED Role

"Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (385 amino acids)

>ABCV34_RS10530 branched-chain amino acid ABC transporter substrate-binding protein (Castellaniella sp019104865 MT123)
MLKHKEIIIGAALLLASPLSFGQTTVIKIGHIGPLTGPQAVIGKDNENGVRMAIEQLNAK
GLNVAGKSVQFELDSQDDQADPRQGVTAAQKLVDDGVVAVIGPYNSGVAIPASKVFAQAE
IPVLTVASNPTVTQQGYKNIVRVGANDGQLGGRMAEYAYEQLHARTAAVVDDRTAYGKGV
ADEFEKVAEKLGFKVVGREYSNDKAVDFRAILTKIKPLRPDVIFYGGYAAQGAPLVKQAR
QLAMRVKVLGGDGICSPDMGKVAGAAASDVFCAQSGASLDASDAGRDFSQQYLSKFKTQT
QIFGVNFYDAMMLVAEAIQKEGSTDPHKIRAYLASARYKGVAGNYAFTTEGDLKGAPTTV
YTFVDGQIKPAVRATQQPRGGLAAN