Protein Info for ABCV34_RS09980 in Castellaniella sp019104865 MT123

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 transmembrane" amino acids 24 to 47 (24 residues), see Phobius details amino acids 81 to 107 (27 residues), see Phobius details amino acids 119 to 142 (24 residues), see Phobius details amino acids 163 to 187 (25 residues), see Phobius details amino acids 215 to 239 (25 residues), see Phobius details amino acids 268 to 290 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 99 to 293 (195 residues), 58.5 bits, see alignment E=3.9e-20

Best Hits

KEGG orthology group: None (inferred from 66% identity to xau:Xaut_0858)

Predicted SEED Role

"Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1)" in subsystem Polyamine Metabolism (TC 3.A.1.11.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (300 amino acids)

>ABCV34_RS09980 ABC transporter permease (Castellaniella sp019104865 MT123)
MAVTSFSVSPSVAMPIKRKRKSPVFNLVAPATLLVVFGLLAPLLLMFRYSFNKFVPAELM
VSTFTLENYSKFFGDRFYQDVLLVTLGMSAASTVICLMLGFPVAYFLARIASDRWKSVFF
IMIVLPLLMGNAVRTAAWMLVLGDKGLLSTMAGYVGLSLEKVMYTPTAVLVGLVSVLLPF
MIIILLGTIQSIDSNLEHAAESLGARHLTVVRRVLLPLAMPGLLTGTMLCFILAMNAYAT
PVLLGGPQFHMMAPEIYQQVTKAMNWPFGAALAFALMAVTLVLVVVMTAVTQRHYRKWSE