Protein Info for ABCV34_RS09930 in Castellaniella sp019104865 MT123

Annotation: response regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 199 PF00072: Response_reg" amino acids 10 to 115 (106 residues), 77.7 bits, see alignment E=7.6e-26 PF00196: GerE" amino acids 136 to 190 (55 residues), 47 bits, see alignment E=1.6e-16

Best Hits

Swiss-Prot: 40% identical to FIXJ_AZOC5: Transcriptional regulatory protein FixJ (fixJ) from Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 / NBRC 14845 / NCIMB 13405 / ORS 571)

KEGG orthology group: None (inferred from 75% identity to rfr:Rfer_0921)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (199 amino acids)

>ABCV34_RS09930 response regulator (Castellaniella sp019104865 MT123)
MKDIPLTLYVVDDDEALRRSLLMLLFSQGVPVQSFGSGEEFLASVDMRRPGCVILDLRLG
GISGLEVLDRLRHAHSPLVSLFLSGHGDIPTALEAVRLGAHDWVVKPDTQQLLEKLPAAL
AEARARSEALRRWGELTPREREVAHWVGLGQPNKEIARLLVPPCSPRSVETHRASIFDKL
AVANDNELGRWLASHPWLA