Protein Info for ABCV34_RS09575 in Castellaniella sp019104865 MT123

Annotation: glycoside hydrolase family 31 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 695 PF01055: Glyco_hydro_31_2nd" amino acids 206 to 520 (315 residues), 137.4 bits, see alignment E=7.4e-44 PF21365: Glyco_hydro_31_3rd" amino acids 531 to 617 (87 residues), 77.1 bits, see alignment E=1.2e-25

Best Hits

KEGG orthology group: K01811, putative family 31 glucosidase (inferred from 66% identity to put:PT7_0027)

Predicted SEED Role

"Alpha-xylosidase (EC 3.2.1.-)" in subsystem Xylose utilization (EC 3.2.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.-

Use Curated BLAST to search for 3.2.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (695 amino acids)

>ABCV34_RS09575 glycoside hydrolase family 31 protein (Castellaniella sp019104865 MT123)
MRIEAHAPGVFRLRCGPRTWLEPGKPTLRAQRQADMLLARQEAVGEFDCQSPEPGHWRLS
HGEACLAIGGADPVLSLSCRDLGVAQARLSARPVADADGESRWRIEWSLDEDEGLFGLGE
TLGDLDRRASLLVSDAPADRCLPLAWSPRGWGVYVNTLDRVEHDLTEQASYTIRARGAGL
DLFLFVGEPGEILNQYTALTGRAGQPNLWPMGVWLDQAQGQTAEQSLQQIRSLRAQGMAL
DVLRLADPAIVGFQTDKPVFEWSDREPNWRALVTGAEALDVHLAGSCIPGVLQGTPLFDE
WEDRGWLLCDADGSAWVCPGTPASGGQPFGLLDLTHKDAGRLWTERHQQALEDGLDAPVC
QAQFDFPANIEARGGEADAVLRTSYPHLARRALFDAVAAPRTPQEGVMLSRDLFPGVQRF
AWQQGPDVDNSWAGYAETLRAALSVGNSGVAVQTHRLGSAERTPQSMTAELYLRWLAMSV
FSANFSLQGHPDLMPDAFDADTRAKIKHWLQWRYRLLPYVAGIIDDAVRTGLPVQRSMAQ
AYPADPDAHVWDTQYLLGPALLVAPVMQPGGETEVYLPQGDAWWDLNTGWRYEGGTRWTL
RPGLDTLPVFGREGHMLCLGPVAQHTGEINSARILEEVWMFGMPEHNPVVMRNKIRVMQM
QGSSYIKGLEGLRILPSEGLEVKRRGAEVRISRAR