Protein Info for ABCV34_RS09325 in Castellaniella sp019104865 MT123

Annotation: TRAP transporter small permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 186 transmembrane" amino acids 24 to 46 (23 residues), see Phobius details amino acids 66 to 77 (12 residues), see Phobius details amino acids 101 to 120 (20 residues), see Phobius details amino acids 139 to 162 (24 residues), see Phobius details PF04290: DctQ" amino acids 36 to 156 (121 residues), 58.9 bits, see alignment E=2.6e-20

Best Hits

KEGG orthology group: None (inferred from 38% identity to lch:Lcho_3673)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (186 amino acids)

>ABCV34_RS09325 TRAP transporter small permease (Castellaniella sp019104865 MT123)
MQTSDRDPAHAGRGWALLNRATKALAMGGGLVFVALIVISLVSIIGRKLGFGSITGDVEI
MQTGTAVAAAAFLPYCTLVGDHLRVDIFTEWLPARVRQVMDGICELILGAVILLLAWRTG
LSALHLRDAGDTTTLLGWPIWIPVAIMVPCLLLTVLSTAWRVQAALGWAQYRSRQEQMAV
DQGVSA