Protein Info for ABCV34_RS09255 in Castellaniella sp019104865 MT123

Annotation: outer membrane lipoprotein LolB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 214 transmembrane" amino acids 30 to 50 (21 residues), see Phobius details PF03550: LolB" amino acids 59 to 212 (154 residues), 108.7 bits, see alignment E=1.4e-35

Best Hits

Swiss-Prot: 46% identical to LOLB_BORPE: Outer-membrane lipoprotein LolB (lolB) from Bordetella pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)

KEGG orthology group: K02494, outer membrane lipoprotein LolB (inferred from 50% identity to put:PT7_2124)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (214 amino acids)

>ABCV34_RS09255 outer membrane lipoprotein LolB (Castellaniella sp019104865 MT123)
MSGLCALPGGVPTVVPLGTGSRRTGPWTRAWRLLAGLALLVWLTGCATPTRIGGQGPAFE
RVGRFAVNLQPVAQAPYAAQGGFSWRDDGRTLRLDLSTPLGSVLARIQVAPGLSVLEHAD
GSRESAPSPDDLLELVWGHSMPVSGLRYWIRGQVEPGRAVTDEQRDDQGRPTALWQDGWD
VRLSSYDAQGPGRIRLFRQDAQGEWRLQLIVDRG