Protein Info for ABCV34_RS09235 in Castellaniella sp019104865 MT123

Annotation: 50S ribosomal protein L25/general stress protein Ctc

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 206 PF01386: Ribosomal_L25p" amino acids 4 to 91 (88 residues), 85.9 bits, see alignment E=2.2e-28 TIGR00731: ribosomal protein bL25, Ctc-form" amino acids 4 to 177 (174 residues), 128.4 bits, see alignment E=1.2e-41 PF14693: Ribosomal_TL5_C" amino acids 100 to 176 (77 residues), 66 bits, see alignment E=3.1e-22

Best Hits

Swiss-Prot: 66% identical to RL25_BORPA: 50S ribosomal protein L25 (rplY) from Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)

KEGG orthology group: K02897, large subunit ribosomal protein L25 (inferred from 66% identity to bbr:BB0902)

Predicted SEED Role

"LSU ribosomal protein L25p" in subsystem Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (206 amino acids)

>ABCV34_RS09235 50S ribosomal protein L25/general stress protein Ctc (Castellaniella sp019104865 MT123)
MKFTATSRSVQGSSASRRLRRAGRVPAIVYGGQSAPANIELDHNEIYHALNKEEFHASIL
DMVLDGNKAEPVLVRAVQWHPYKALVLHVDFQRVDASQAVTTKIPVHYLNADQSPAVKLA
GQVITHGPSELDITCLPANLPQFVEVDLGGLVGNARLHLSDITLPMGVKYVPHGDDVNPL
LGQASAPKGATADEAAPATPEAPAAE