Protein Info for ABCV34_RS08920 in Castellaniella sp019104865 MT123

Annotation: iron-sulfur cluster carrier protein ApbC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 361 PF10609: ParA" amino acids 96 to 338 (243 residues), 333.7 bits, see alignment E=1.3e-103 PF13614: AAA_31" amino acids 98 to 136 (39 residues), 37.4 bits, see alignment 5.2e-13 PF09140: MipZ" amino acids 99 to 140 (42 residues), 31.6 bits, see alignment 2.2e-11 PF01656: CbiA" amino acids 100 to 223 (124 residues), 47.1 bits, see alignment E=4.6e-16

Best Hits

KEGG orthology group: K03593, ATP-binding protein involved in chromosome partitioning (inferred from 70% identity to put:PT7_2161)

Predicted SEED Role

"Scaffold protein for [4Fe-4S] cluster assembly ApbC, MRP-like"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (361 amino acids)

>ABCV34_RS08920 iron-sulfur cluster carrier protein ApbC (Castellaniella sp019104865 MT123)
MSTTSQDIRSALSRVINPDTRKTLAVTDADLQIAAAGDAFDITVTLGYPVFNGEQALRQA
IQDALAAAGIRLGALNFDTRIATHAVQRGLRPLDSVRNIIAVASGKGGVGKSTTAVNLAL
ALQAQGARVGLLDADIYGPSVPIMLGLSGKPKSADGKTMEPMIGHGLQSNSIGFLMDDDG
PAIWRGPMVTQALTQLLSLTNWNNLDYLIVDMPPGTGDIALTMAQKVPLTGAVIVTTPQD
LALADARKGLIMFQKVDVPVLGIVENMSVHVCSNCGHVEPIFGQDGGRQLAATYHLPWLG
ALPLQLDIRQETDSGRPSVVASPDGKAAQLYHQIAHQLAVHVAGQPLDDSGVRPKVVARK
T