Protein Info for ABCV34_RS08895 in Castellaniella sp019104865 MT123

Annotation: NAD(P)/FAD-dependent oxidoreductase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 412 transmembrane" amino acids 6 to 26 (21 residues), see Phobius details PF03486: HI0933_like" amino acids 8 to 407 (400 residues), 424.5 bits, see alignment E=1.2e-130 PF00890: FAD_binding_2" amino acids 9 to 52 (44 residues), 26.7 bits, see alignment 9.7e-10 TIGR00275: flavoprotein, HI0933 family" amino acids 10 to 407 (398 residues), 370 bits, see alignment E=6.7e-115 PF13450: NAD_binding_8" amino acids 12 to 42 (31 residues), 22.5 bits, see alignment (E = 3.5e-08)

Best Hits

KEGG orthology group: K07007, (no description) (inferred from 69% identity to put:PT7_2156)

Predicted SEED Role

"NAD(FAD)-utilizing dehydrogenases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (412 amino acids)

>ABCV34_RS08895 NAD(P)/FAD-dependent oxidoreductase (Castellaniella sp019104865 MT123)
MPRSDGIFDVAVIGAGAAGMMTAAVAGQRGLRVVLIDHAERLAEKIRISGGGRCNFTNLG
TSPAQFLSRNPDFCRSALRAYGPRDFLDLLRTHGVSWHEKHRGQLFCDDSSESIIDVLRR
ECEAGGVAWRMPCAVRSVAREDGGFMLATESGTIRAAQLVLATGGMAIPQLGATDFSLRV
ARQFGLKIVEPRPALVPLTFDAQAWQPFAALSGVALEVRLSHEASSPQERTKRHRGPART
EFFEDLLFTHRGLSGPGILQISSYWQPGDPIHIDLAPGQAVADILIAAKSGGRQTLLTAL
SGIWPRRLAEAWLSEDSGRRLADIPDRQLRALGDRIRDWTLWPTGTAGYKKAEVMSGGVD
TGELDQRSLQAHRCPGLYVIGEAVDVTGWLGGYNFQWAWASGVACGRALVRL