Protein Info for ABCV34_RS07950 in Castellaniella sp019104865 MT123

Annotation: cytochrome c oxidase assembly protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 283 transmembrane" amino acids 12 to 30 (19 residues), see Phobius details amino acids 42 to 59 (18 residues), see Phobius details amino acids 75 to 94 (20 residues), see Phobius details amino acids 121 to 140 (20 residues), see Phobius details amino acids 153 to 173 (21 residues), see Phobius details amino acids 190 to 210 (21 residues), see Phobius details amino acids 235 to 258 (24 residues), see Phobius details PF09678: Caa3_CtaG" amino acids 25 to 262 (238 residues), 151.5 bits, see alignment E=1.3e-48

Best Hits

KEGG orthology group: K02351, putative membrane protein (inferred from 71% identity to put:PT7_1997)

Predicted SEED Role

"putative inner membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (283 amino acids)

>ABCV34_RS07950 cytochrome c oxidase assembly protein (Castellaniella sp019104865 MT123)
MDPLAWLQPWEFSPVLVMAFLASAWLFVRGRQVHRVGRARQALFWIGWVLLYLSLHTRVD
YYAERMFFIHRLQHLVLHHLGPLLVMGAYPGQVMRAGLPPAWRTGLAAARRRPLLRGLET
LATHRFLIPFLFVVLVLVWLEPTVQFYSMLDWRIYRFMNWSVVISGLLYWNLILDRRPHP
PAVMSAGGRVFSPVFTMVPQMVAGAAIAFTTHDLYPVFELCGRALPSFGALDDQVIGGLI
MWVPAGLIESFGLLYALGTLMRLSSRGRLPPSRRRVARQPVGA