Protein Info for ABCV34_RS07850 in Castellaniella sp019104865 MT123

Annotation: TRAP transporter small permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 158 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 45 to 62 (18 residues), see Phobius details amino acids 83 to 101 (19 residues), see Phobius details amino acids 121 to 144 (24 residues), see Phobius details PF04290: DctQ" amino acids 21 to 151 (131 residues), 120 bits, see alignment E=3.3e-39

Best Hits

KEGG orthology group: None (inferred from 65% identity to axy:AXYL_04310)

Predicted SEED Role

"C4-dicarboxylate transport system (permease small protein)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (158 amino acids)

>ABCV34_RS07850 TRAP transporter small permease (Castellaniella sp019104865 MT123)
MLKWIDDHFEEALLVFLLSAMSLLIGGQVFMRYVMMNSLAWSEELARYCFIWATYLGVSY
GVKRKAHICVTAVSERLSGNPQRYLHIFAYLIFGLFAFLVMKEGWALAMKIFRFGQKSSS
LGIYMGWIYLAPTISFGLVVLRLLQAIGHEVRAIRQGA