Protein Info for ABCV34_RS07695 in Castellaniella sp019104865 MT123

Annotation: ferric reductase-like transmembrane domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 201 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 41 to 61 (21 residues), see Phobius details amino acids 78 to 96 (19 residues), see Phobius details amino acids 136 to 154 (19 residues), see Phobius details amino acids 166 to 186 (21 residues), see Phobius details PF01794: Ferric_reduct" amino acids 44 to 173 (130 residues), 60.5 bits, see alignment E=8.4e-21

Best Hits

Predicted SEED Role

"putative flavocytochrome"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (201 amino acids)

>ABCV34_RS07695 ferric reductase-like transmembrane domain-containing protein (Castellaniella sp019104865 MT123)
MKIRHILITFLGILTLAWAWDVFVLNPMPGDAIWVARKQGIYLTGVWAMGLMSLTMILAT
RPVWLEPVLGGMDRIYHLHKWAGILAVSAGITHWLLELGGDTLRSLIGRAVNKPPRVAVL
DILQSSRGLAEDVGEWAIYALIATLLITLWKAFPYKSWRILHRVMPVLYLALVFHSVALT
PAAWPWCCRLSGSGRRSGCRP